Variant report

Variant	rs13079714
Chromosome Location	chr3:88031219-88031220
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12632860	0.88[AFR][1000 genomes]
rs1431154	0.84[AFR][1000 genomes]
rs1604700	0.94[AFR][1000 genomes]
rs1897238	0.84[AFR][1000 genomes]
rs4515075	0.87[AFR][1000 genomes]
rs4858927	0.94[AFR][1000 genomes]
rs4858970	0.83[AFR][1000 genomes]
rs930154	0.84[AFR][1000 genomes]
rs9812903	0.84[AFR][1000 genomes]
rs9867614	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88020600-88037000	Weak transcription	K562	blood
2	chr3:88029600-88031800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:88029600-88039800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr3:88030200-88045400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr3:88030600-88031400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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