Variant report

Variant	rs4303891
Chromosome Location	chr3:88159835-88159836
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:88158786..88165210-chr3:88196587..88200027,7	MCF-7	breast:
2	chr3:88155123..88157675-chr3:88158840..88161085,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163320	Chromatin interaction
ENSG00000179021	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11128023	0.83[AFR][1000 genomes]
rs1431154	1.00[MEX][hapmap];0.85[YRI][hapmap]
rs2567037	0.89[YRI][hapmap];0.82[AFR][1000 genomes]
rs4287925	0.86[AFR][1000 genomes]
rs4443201	0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs4513473	0.93[AFR][1000 genomes]
rs4858933	0.90[ASW][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs6551270	0.90[YRI][hapmap];0.89[AFR][1000 genomes]
rs7615309	0.89[AFR][1000 genomes]
rs7621357	0.90[ASW][hapmap];1.00[MEX][hapmap];0.90[YRI][hapmap]
rs7625641	0.86[AFR][1000 genomes]
rs7636845	0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs7650912	0.85[AFR][1000 genomes]
rs7650915	0.84[AFR][1000 genomes]
rs9310064	1.00[AMR][1000 genomes]
rs9310073	0.90[ASW][hapmap];1.00[MEX][hapmap];0.85[YRI][hapmap];0.89[AFR][1000 genomes]
rs9860113	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
2	nsv916330	chr3:88083580-88884125	Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88125200-88163600	Weak transcription	NHDF-Ad	bronchial
2	chr3:88128800-88198200	Weak transcription	Esophagus	oesophagus
3	chr3:88129600-88180200	Weak transcription	NHEK	skin
4	chr3:88134000-88176400	Weak transcription	Ovary	ovary
5	chr3:88134800-88188200	Weak transcription	Stomach Smooth Muscle	stomach
6	chr3:88135600-88196800	Weak transcription	Hela-S3	cervix
7	chr3:88137200-88162600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr3:88137400-88163800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr3:88137400-88188200	Weak transcription	Fetal Kidney	kidney
10	chr3:88138200-88180800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:88139200-88163800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr3:88140200-88163800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr3:88140400-88163800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr3:88140400-88167000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr3:88140600-88163200	Weak transcription	Fetal Intestine Large	intestine
16	chr3:88140600-88163600	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr3:88140800-88162600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr3:88140800-88162600	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr3:88140800-88162600	Weak transcription	HSMM	muscle
20	chr3:88140800-88163200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr3:88140800-88163400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr3:88140800-88176000	Weak transcription	K562	blood
23	chr3:88141000-88163600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr3:88141000-88163800	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr3:88141000-88165200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:88141000-88197800	Weak transcription	Thymus	Thymus
27	chr3:88141200-88163400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr3:88141200-88163600	Weak transcription	Duodenum Mucosa	Duodenum
29	chr3:88141200-88167200	Weak transcription	Liver	Liver
30	chr3:88141200-88182200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr3:88141400-88162400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:88145200-88191000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr3:88145200-88198200	Weak transcription	Aorta	Aorta
34	chr3:88146400-88162600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr3:88146400-88167400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr3:88146600-88162600	Weak transcription	Fetal Thymus	thymus
37	chr3:88146600-88162800	Weak transcription	Fetal Lung	lung
38	chr3:88146600-88163000	Weak transcription	Dnd41	blood
39	chr3:88146600-88163200	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr3:88146600-88166800	Weak transcription	Primary hematopoietic stem cells	blood
41	chr3:88146800-88163800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr3:88146800-88179600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr3:88147000-88161800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr3:88147000-88162400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr3:88148000-88196400	Weak transcription	Fetal Intestine Small	intestine
46	chr3:88148800-88167200	Weak transcription	Primary B cells from cord blood	blood
47	chr3:88150000-88184600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr3:88150600-88163600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr3:88151400-88167000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr3:88152000-88197000	Weak transcription	Lung	lung

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