Variant report

Variant	rs2916085
Chromosome Location	chr8:108448613-108448614
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1283675	0.82[GIH][hapmap]
rs1283678	0.80[GIH][hapmap]
rs1283679	0.80[GIH][hapmap]
rs1283681	0.82[JPT][hapmap]
rs1283682	0.82[JPT][hapmap]
rs1283712	0.86[CHD][hapmap]
rs1283725	0.84[AMR][1000 genomes]
rs1654680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654681	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1654773	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1672166	0.80[GIH][hapmap]
rs2916084	0.82[JPT][hapmap]
rs2959354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108434000-108449800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:108439800-108449800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:108440600-108452000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr8:108441400-108449800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:108441800-108455400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr8:108442000-108449800	Weak transcription	Small Intestine	intestine
7	chr8:108442800-108450000	Weak transcription	Osteobl	bone
8	chr8:108443000-108451800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr8:108443200-108449400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:108443400-108448800	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr8:108443600-108449000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr8:108444000-108448800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:108444000-108448800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr8:108444000-108449600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr8:108446200-108449600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr8:108447200-108455400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:108447400-108450000	Enhancers	Rectal Smooth Muscle	rectum
18	chr8:108447600-108448800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr8:108447600-108449000	Enhancers	Ovary	ovary
20	chr8:108447600-108451400	Enhancers	Primary hematopoietic stem cells	blood
21	chr8:108447800-108448800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr8:108447800-108450200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:108448000-108449400	Weak transcription	Dnd41	blood
24	chr8:108448200-108449000	Enhancers	Fetal Muscle Leg	muscle
25	chr8:108448200-108449000	Enhancers	Psoas Muscle	Psoas
26	chr8:108448200-108450200	Enhancers	Colon Smooth Muscle	Colon
27	chr8:108448200-108450400	Enhancers	NHDF-Ad	bronchial
28	chr8:108448400-108449000	Enhancers	Adipose Nuclei	Adipose
29	chr8:108448400-108449000	Enhancers	Aorta	Aorta
30	chr8:108448400-108449000	Enhancers	Duodenum Smooth Muscle	Duodenum
31	chr8:108448400-108449000	Flanking Active TSS	Stomach Smooth Muscle	stomach
32	chr8:108448400-108449000	Enhancers	K562	blood
33	chr8:108448400-108449200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr8:108448400-108450400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr8:108448400-108450400	Enhancers	Fetal Kidney	kidney
36	chr8:108448400-108451800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr8:108448600-108448800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:108448600-108449000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr8:108448600-108449000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:108448600-108449600	Enhancers	Primary B cells from cord blood	blood
41	chr8:108448600-108449600	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr8:108448600-108449800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:108448600-108450400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
44	chr8:108448600-108450400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links