Variant report

Variant	rs1283679
Chromosome Location	chr8:108427493-108427494
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:108419893..108422484-chr8:108427371..108429959,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1283663	0.92[CEU][hapmap];0.92[GIH][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs1283664	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1283675	0.93[ASW][hapmap];0.92[CEU][hapmap];0.86[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.92[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1283676	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283677	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283678	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283680	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1283685	0.92[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs1283692	0.92[CEU][hapmap];0.91[YRI][hapmap];0.84[EUR][1000 genomes]
rs1283694	0.93[ASW][hapmap];0.92[CEU][hapmap];0.92[GIH][hapmap];0.82[MKK][hapmap];0.84[TSI][hapmap];0.82[YRI][hapmap];0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1283695	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1283697	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1283699	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1283702	0.84[EUR][1000 genomes]
rs1283703	0.90[GIH][hapmap]
rs1283712	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1283716	0.80[ASN][1000 genomes]
rs1298936	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.92[JPT][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1433182	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1654680	0.80[GIH][hapmap]
rs1654729	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs1654750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1654751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1672165	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1672166	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514866	0.82[EUR][1000 genomes]
rs2916083	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs2916085	0.80[GIH][hapmap]
rs892248	0.86[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764100	chr8:108220671-108469233	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1030831	chr8:108224295-108466437	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv539714	chr8:108224295-108466437	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv465760	chr8:108224687-108485912	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv611851	chr8:108224687-108485912	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:108420200-108429000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:108420200-108441400	Weak transcription	Aorta	Aorta
3	chr8:108421800-108433800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr8:108421800-108448200	Weak transcription	Psoas Muscle	Psoas
5	chr8:108423000-108431200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr8:108426600-108428000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:108426600-108428400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:108426800-108427800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr8:108426800-108428000	Enhancers	HSMM	muscle
10	chr8:108426800-108428000	Enhancers	Osteobl	bone
11	chr8:108427000-108428000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:108427200-108427600	Enhancers	HSMMtube	muscle
13	chr8:108427200-108427800	Enhancers	NHLF	lung
14	chr8:108427400-108432600	Strong transcription	Primary hematopoietic stem cells short term culture	blood

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