Variant report

Variant	rs292101
Chromosome Location	chr11:86082402-86082403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TEAD4	chr11:86082183-86082682	ECC-1	luminal epithelium:	n/a	n/a
2	TEAD4	chr11:86082171-86082705	ECC-1	luminal epithelium:	n/a	n/a
3	JUN	chr11:86082314-86082591	HUVEC	blood vessel:	n/a	n/a
4	MAFK	chr11:86082309-86082622	Hela-S3	cervix:	n/a	chr11:86082463-86082478
5	MAFK	chr11:86082280-86082641	K562	blood:	n/a	chr11:86082463-86082478
6	CBX3	chr11:86082222-86082733	K562	blood:	n/a	n/a
7	CEBPB	chr11:86082334-86082670	K562	blood:	n/a	chr11:86082499-86082510
8	MAFK	chr11:86082279-86082654	IMR90	lung:	n/a	chr11:86082463-86082478
9	BACH1	chr11:86082238-86082648	H1-hESC	embryonic stem cell:	n/a	n/a
10	CEBPB	chr11:86082363-86082552	K562	blood:	n/a	chr11:86082499-86082510
11	GATA3	chr11:86082186-86082643	T-47D	breast:	n/a	n/a
12	MAFK	chr11:86082283-86082649	HepG2	liver:	n/a	chr11:86082463-86082478
13	MAFK	chr11:86082290-86082638	HepG2	liver:	n/a	chr11:86082463-86082478
14	EP300	chr11:86082301-86082628	K562	blood:	n/a	n/a
15	JUND	chr11:86082224-86082546	K562	blood:	n/a	n/a
16	TAL1	chr11:86082241-86082441	K562	blood:	n/a	n/a
17	ELF1	chr11:86082329-86082589	K562	blood:	n/a	n/a
18	TEAD4	chr11:86082066-86082629	K562	blood:	n/a	n/a
19	FOS	chr11:86082202-86082640	HUVEC	blood vessel:	n/a	chr11:86082462-86082473
20	MAFF	chr11:86082298-86082636	HepG2	liver:	n/a	chr11:86082462-86082480
21	ATF1	chr11:86082244-86082540	K562	blood:	n/a	n/a
22	BACH1	chr11:86082331-86082579	K562	blood:	n/a	n/a
23	KAP1	chr11:86082229-86082651	K562	blood:	n/a	n/a
24	TCF12	chr11:86082170-86082826	ECC-1	luminal epithelium:	n/a	n/a
25	CEBPB	chr11:86082291-86082612	K562	blood:	n/a	chr11:86082499-86082510
26	TCF12	chr11:86082122-86082739	ECC-1	luminal epithelium:	n/a	n/a
27	POLR2A	chr11:86082006-86082755	HUVEC	blood vessel:	n/a	n/a
28	RCOR1	chr11:86082187-86082478	K562	blood:	n/a	n/a
29	MAFK	chr11:86082285-86082636	H1-hESC	embryonic stem cell:	n/a	chr11:86082463-86082478
30	MAFF	chr11:86082273-86082650	K562	blood:	n/a	chr11:86082462-86082480
31	GATA2	chr11:86082189-86082830	HUVEC	blood vessel:	n/a	n/a
32	MAX	chr11:86082165-86082707	ECC-1	luminal epithelium:	n/a	n/a

Variant related genes	Relation type
CCDC81	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs167109	0.88[AFR][1000 genomes]
rs292094	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs292096	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292100	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs292102	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs292103	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292105	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614301	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs292101	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86080600-86084200	Enhancers	HMEC	breast
2	chr11:86080800-86082800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr11:86081400-86082600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr11:86081600-86082600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:86081600-86082800	Weak transcription	Esophagus	oesophagus
6	chr11:86081600-86083000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:86081600-86084600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:86081800-86082800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:86081800-86083000	Enhancers	HUVEC	blood vessel
10	chr11:86081800-86084400	Enhancers	NHEK	skin
11	chr11:86082000-86083400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr11:86082000-86084000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr11:86082200-86082600	Enhancers	NH-A	brain
14	chr11:86082200-86083000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
15	chr11:86082200-86083000	Enhancers	Placenta	Placenta
16	chr11:86082200-86083000	Enhancers	K562	blood
17	chr11:86082400-86082600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr11:86082400-86082800	Weak transcription	Fetal Brain Female	brain
19	chr11:86082400-86082800	Enhancers	NHDF-Ad	bronchial
20	chr11:86082400-86085400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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