Variant report

Variant	rs292103
Chromosome Location	chr11:86082980-86082981
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs167109	0.87[AFR][1000 genomes]
rs292094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs292096	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292100	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs292101	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs292102	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs292105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614301	0.96[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs292103	C11orf73	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86080600-86084200	Enhancers	HMEC	breast
2	chr11:86081600-86083000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:86081600-86084600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:86081800-86083000	Enhancers	HUVEC	blood vessel
5	chr11:86081800-86084400	Enhancers	NHEK	skin
6	chr11:86082000-86083400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:86082000-86084000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:86082200-86083000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
9	chr11:86082200-86083000	Enhancers	Placenta	Placenta
10	chr11:86082200-86083000	Enhancers	K562	blood
11	chr11:86082400-86085400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:86082600-86083000	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:86082600-86083200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:86082600-86083200	Enhancers	Fetal Brain Male	brain
15	chr11:86082600-86084400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr11:86082800-86083000	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:86082800-86083000	ZNF genes & repeats	Esophagus	oesophagus
18	chr11:86082800-86083000	Enhancers	Fetal Brain Female	brain
19	chr11:86082800-86083000	Enhancers	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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