Variant report

Variant	rs2921336
Chromosome Location	chr11:70680871-70680872
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:70675919..70677822-chr11:70680515..70682069,2	MCF-7	breast:
2	chr11:70679855..70682790-chr11:70686002..70687918,2	MCF-7	breast:
3	chr11:70673259..70675556-chr11:70677870..70681745,4	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2921334	0.93[AFR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2921337	0.82[AFR][1000 genomes]
rs2921338	0.82[AFR][1000 genomes]
rs3017476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019841	0.82[AFR][1000 genomes]
rs3019842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7946750	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2921336	TMEM134	cis	parietal	SCAN
rs2921336	FAM168A	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:70665400-70684400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:70670000-70731800	Weak transcription	Gastric	stomach
3	chr11:70673000-70681200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:70673000-70688800	Weak transcription	Pancreas	Pancrea
5	chr11:70674000-70683800	Weak transcription	Fetal Intestine Large	intestine
6	chr11:70677400-70683200	Strong transcription	Fetal Intestine Small	intestine
7	chr11:70678400-70686200	Strong transcription	HepG2	liver
8	chr11:70679000-70682400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:70679200-70681800	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:70679600-70681400	Enhancers	H9 Cell Line	embryonic stem cell
11	chr11:70679600-70681400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:70679600-70681800	Strong transcription	Liver	Liver
13	chr11:70679800-70681000	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr11:70679800-70681400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:70679800-70681400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr11:70679800-70681600	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr11:70680200-70681400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:70680400-70681000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:70680400-70681200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:70680400-70681200	Enhancers	HSMMtube	muscle
21	chr11:70680400-70681600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:70680600-70681000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
23	chr11:70680600-70681200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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