Variant report

Variant	rs292142
Chromosome Location	chr20:52890758-52890759
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1040857	0.87[ASN][1000 genomes]
rs1157418	0.82[ASN][1000 genomes]
rs1293134	0.82[ASN][1000 genomes]
rs1343081	0.82[ASN][1000 genomes]
rs1477734	0.82[ASN][1000 genomes]
rs1477735	0.82[ASN][1000 genomes]
rs16999299	0.86[ASN][1000 genomes]
rs16999320	0.82[ASN][1000 genomes]
rs16999351	0.81[ASN][1000 genomes]
rs28372633	0.86[ASN][1000 genomes]
rs28460139	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs292116	0.87[AMR][1000 genomes]
rs6013948	0.87[ASN][1000 genomes]
rs6013954	0.82[ASN][1000 genomes]
rs6013957	0.81[ASN][1000 genomes]
rs6023079	0.84[AMR][1000 genomes]
rs6023086	0.86[ASN][1000 genomes]
rs6023089	0.82[ASN][1000 genomes]
rs6023092	0.82[ASN][1000 genomes]
rs6023096	0.81[ASN][1000 genomes]
rs73137452	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv178887	chr20:52885413-52894836	Enhancers Weak transcription	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52890000-52893200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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