Variant report

No.	Distal block	Cell Line	Cell type
1	chr20:52903809..52908618-chr20:52965034..52968390,4	MCF-7	breast:
2	chr20:52887664..52890260-chr20:52906709..52909647,3	MCF-7	breast:
3	chr19:35738580..35741475-chr20:52904507..52907195,2	MCF-7	breast:
4	chr20:52823784..52826256-chr20:52906954..52909912,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000101132	Chromatin interaction
ENSG00000105699	Chromatin interaction

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1040857	0.92[ASN][1000 genomes]
rs10485791	0.86[ASN][1000 genomes]
rs1157418	1.00[ASN][1000 genomes]
rs1293134	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477734	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1477735	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16999299	0.96[ASN][1000 genomes]
rs16999320	1.00[ASN][1000 genomes]
rs16999351	0.93[ASN][1000 genomes]
rs16999389	0.83[ASN][1000 genomes]
rs16999393	0.83[ASN][1000 genomes]
rs28372633	0.96[ASN][1000 genomes]
rs28460139	0.89[ASN][1000 genomes]
rs292142	0.82[ASN][1000 genomes]
rs56947353	0.83[ASN][1000 genomes]
rs6013948	0.92[ASN][1000 genomes]
rs6013954	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6013957	0.93[ASN][1000 genomes]
rs6013964	0.80[ASN][1000 genomes]
rs6023086	0.96[ASN][1000 genomes]
rs6023089	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6023092	1.00[ASN][1000 genomes]
rs6023096	0.93[ASN][1000 genomes]
rs6023105	0.96[ASN][1000 genomes]
rs6023107	0.80[ASN][1000 genomes]
rs60650892	0.83[ASN][1000 genomes]
rs60900910	0.83[ASN][1000 genomes]
rs6097910	0.83[ASN][1000 genomes]
rs6097911	0.83[ASN][1000 genomes]
rs6097912	0.83[ASN][1000 genomes]
rs67043187	0.83[ASN][1000 genomes]
rs67291713	0.83[ASN][1000 genomes]
rs67348261	0.83[ASN][1000 genomes]
rs67738640	0.83[ASN][1000 genomes]
rs7265344	0.83[ASN][1000 genomes]
rs7266330	0.97[ASN][1000 genomes]
rs768113	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv962638	chr20:52883415-52917517	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52906600-52909600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr20:52906800-52907400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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