Variant report
| Variant | rs768113 |
|---|---|
| Chromosome Location | chr20:52934685-52934686 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr20:52823575..52826757-chr20:52934438..52938480,4 | MCF-7 | breast: | |
| 2 | chr20:52881988..52885819-chr20:52932723..52935221,3 | MCF-7 | breast: | |
| 3 | chr20:52932642..52935057-chr20:52959854..52962762,2 | K562 | blood: | |
| 4 | chr20:52933134..52935057-chr20:52935363..52937322,2 | MCF-7 | breast: | |
| 5 | chr20:52838614..52841427-chr20:52933611..52935858,2 | MCF-7 | breast: | |
| 6 | chr20:52830268..52836346-chr20:52932384..52936332,6 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000101132 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10485791 | 0.91[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1157418 | 0.83[ASN][1000 genomes] |
| rs1293134 | 0.83[ASN][1000 genomes] |
| rs1343081 | 0.83[ASN][1000 genomes] |
| rs1477734 | 0.83[ASN][1000 genomes] |
| rs1477735 | 0.83[ASN][1000 genomes] |
| rs16999320 | 0.83[ASN][1000 genomes] |
| rs16999351 | 0.82[ASN][1000 genomes] |
| rs16999389 | 1.00[ASN][1000 genomes] |
| rs16999393 | 1.00[ASN][1000 genomes] |
| rs56947353 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6013954 | 0.83[ASN][1000 genomes] |
| rs6013957 | 0.82[ASN][1000 genomes] |
| rs6013964 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6023089 | 0.83[ASN][1000 genomes] |
| rs6023092 | 0.83[ASN][1000 genomes] |
| rs6023096 | 0.82[ASN][1000 genomes] |
| rs6023105 | 0.91[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs6023107 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs60650892 | 1.00[ASN][1000 genomes] |
| rs60900910 | 1.00[ASN][1000 genomes] |
| rs6097910 | 1.00[ASN][1000 genomes] |
| rs6097911 | 1.00[ASN][1000 genomes] |
| rs6097912 | 1.00[ASN][1000 genomes] |
| rs67043187 | 1.00[ASN][1000 genomes] |
| rs67291713 | 1.00[ASN][1000 genomes] |
| rs67348261 | 1.00[ASN][1000 genomes] |
| rs67738640 | 1.00[ASN][1000 genomes] |
| rs7265344 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7266330 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv586224 | chr20:52474850-53279490 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 338 gene(s) | inside rSNPs | diseases |
| 2 | nsv834011 | chr20:52858341-53086042 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
| 3 | nsv834012 | chr20:52921007-53097177 | Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
