Variant report

Variant	rs7266330
Chromosome Location	chr20:52924023-52924024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr20:52902315..52904046-chr20:52922393..52924271,2	MCF-7	breast:
2	chr20:52922776..52924284-chr20:52931074..52933006,2	MCF-7	breast:
3	chr20:52824550..52826498-chr20:52922860..52925164,2	MCF-7	breast:
4	chr20:52923632..52926364-chr20:52926650..52929482,4	MCF-7	breast:
5	chr20:52911450..52915662-chr20:52921093..52925920,4	MCF-7	breast:
6	chr20:52823568..52826063-chr20:52923324..52925181,2	MCF-7	breast:
7	chr20:52897965..52899622-chr20:52923358..52924887,2	MCF-7	breast:
8	chr20:52922402..52924055-chr20:52929439..52931142,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000101132	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1040857	0.89[ASN][1000 genomes]
rs10485791	0.89[ASN][1000 genomes]
rs1157418	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1293134	0.97[ASN][1000 genomes]
rs1343081	0.97[ASN][1000 genomes]
rs1477734	0.97[ASN][1000 genomes]
rs1477735	0.97[ASN][1000 genomes]
rs16999299	0.93[ASN][1000 genomes]
rs16999320	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16999351	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16999389	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16999393	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28372633	0.93[ASN][1000 genomes]
rs28460139	0.86[ASN][1000 genomes]
rs56947353	0.86[ASN][1000 genomes]
rs6013948	0.89[ASN][1000 genomes]
rs6013954	0.97[ASN][1000 genomes]
rs6013957	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6013964	0.83[ASN][1000 genomes]
rs6023086	0.93[ASN][1000 genomes]
rs6023089	0.97[ASN][1000 genomes]
rs6023092	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6023096	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6023105	0.99[ASN][1000 genomes]
rs6023107	0.83[ASN][1000 genomes]
rs60650892	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60900910	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6097910	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6097911	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6097912	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67043187	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67291713	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67348261	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs67738640	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7265344	0.86[ASN][1000 genomes]
rs768113	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases
2	nsv834010	chr20:52759824-52932939	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv834011	chr20:52858341-53086042	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
4	nsv834012	chr20:52921007-53097177	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52924000-52924600	Enhancers	H9 Cell Line	embryonic stem cell

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