Variant report
Variant | rs6013964 |
---|---|
Chromosome Location | chr20:52926396-52926397 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:4 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr20:52881900..52884717-chr20:52925408..52927187,2 | MCF-7 | breast: | |
2 | chr20:52924066..52926760-chr20:56284105..56286787,2 | MCF-7 | breast: | |
3 | chr20:52926101..52927623-chr20:52956080..52958145,2 | MCF-7 | breast: | |
4 | chr20:52925826..52928871-chr20:52929162..52931995,4 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000124225 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1040857 | 0.81[ASN][1000 genomes] |
rs10485791 | 0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1157418 | 0.80[ASN][1000 genomes] |
rs1293134 | 0.80[ASN][1000 genomes] |
rs1343081 | 0.80[ASN][1000 genomes] |
rs1477734 | 0.80[ASN][1000 genomes] |
rs1477735 | 0.80[ASN][1000 genomes] |
rs16999320 | 0.80[ASN][1000 genomes] |
rs16999351 | 0.88[ASN][1000 genomes] |
rs16999389 | 0.94[ASN][1000 genomes] |
rs16999393 | 0.94[ASN][1000 genomes] |
rs56947353 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs6013948 | 0.81[ASN][1000 genomes] |
rs6013954 | 0.80[ASN][1000 genomes] |
rs6013957 | 0.88[ASN][1000 genomes] |
rs6023089 | 0.80[ASN][1000 genomes] |
rs6023092 | 0.80[ASN][1000 genomes] |
rs6023096 | 0.88[ASN][1000 genomes] |
rs6023105 | 0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6023107 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs60650892 | 0.94[ASN][1000 genomes] |
rs60900910 | 0.94[ASN][1000 genomes] |
rs6097910 | 0.94[ASN][1000 genomes] |
rs6097911 | 0.94[ASN][1000 genomes] |
rs6097912 | 0.94[ASN][1000 genomes] |
rs67043187 | 0.94[ASN][1000 genomes] |
rs67291713 | 0.94[ASN][1000 genomes] |
rs67348261 | 0.94[ASN][1000 genomes] |
rs67738640 | 0.94[ASN][1000 genomes] |
rs7265344 | 0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs7266330 | 0.83[ASN][1000 genomes] |
rs768113 | 0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv586224 | chr20:52474850-53279490 | Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 338 gene(s) | inside rSNPs | diseases |
2 | nsv834010 | chr20:52759824-52932939 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 119 gene(s) | inside rSNPs | diseases |
3 | nsv834011 | chr20:52858341-53086042 | Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | Chromatin interactive regionlncRNA | 55 gene(s) | inside rSNPs | diseases |
4 | nsv834012 | chr20:52921007-53097177 | Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 43 gene(s) | inside rSNPs | diseases |
No data |