Variant report

Variant	rs2923084
Chromosome Location	chr11:10388782-10388783
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:10386948..10389618-chr11:10548931..10550631,2	K562	blood:
2	chr11:9779526..9781252-chr11:10386817..10389355,2	K562	blood:
3	chr11:10326162..10327746-chr11:10386723..10389027,2	MCF-7	breast:
4	chr11:10387938..10388816-chr11:10427798..10428324,2	MCF-7	breast:
5	chr11:10327968..10329766-chr11:10387274..10390130,2	K562	blood:
6	chr11:9779694..9780301-chr11:10387974..10388849,2	K562	blood:
7	chr11:10329430..10330064-chr11:10388142..10388803,2	MCF-7	breast:
8	chr11:10388047..10388889-chr11:10408886..10409883,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000245522	Chromatin interaction
ENSG00000246273	Chromatin interaction
ENSG00000133805	Chromatin interaction
ENSG00000148926	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10840404	0.83[CHB][hapmap]
rs12577015	0.83[CHB][hapmap]
rs1349326	0.86[CEU][hapmap]
rs6484216	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

Variant related diseases (count:2)

Disease	PMID	Source
HDL cholesterol	24097068	GWAS catalog
HDL cholesterol	20686565	GWAS catalog

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2923084	SNORA23	cis	parietal	SCAN

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10387400-10390000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr11:10387800-10388800	Enhancers	Fetal Intestine Small	intestine
3	chr11:10387800-10388800	Enhancers	Fetal Lung	lung
4	chr11:10387800-10388800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr11:10387800-10388800	Enhancers	HSMMtube	muscle
6	chr11:10387800-10389000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:10387800-10389000	Enhancers	Muscle Satellite Cultured Cells	--
8	chr11:10387800-10389000	Enhancers	Colon Smooth Muscle	Colon
9	chr11:10387800-10389000	Enhancers	NHDF-Ad	bronchial
10	chr11:10387800-10389000	Enhancers	NHLF	lung
11	chr11:10388000-10388800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:10388000-10388800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:10388000-10388800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr11:10388000-10388800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:10388000-10388800	Enhancers	Primary B cells from peripheral blood	blood
16	chr11:10388000-10388800	Enhancers	Brain Hippocampus Middle	brain
17	chr11:10388000-10388800	Enhancers	Esophagus	oesophagus
18	chr11:10388000-10388800	Enhancers	Fetal Intestine Large	intestine
19	chr11:10388000-10388800	Enhancers	Fetal Muscle Trunk	muscle
20	chr11:10388000-10388800	Enhancers	Fetal Thymus	thymus
21	chr11:10388000-10388800	Enhancers	Left Ventricle	heart
22	chr11:10388000-10388800	Enhancers	Ovary	ovary
23	chr11:10388000-10388800	Enhancers	Pancreas	Pancrea
24	chr11:10388000-10388800	Enhancers	Rectal Smooth Muscle	rectum
25	chr11:10388000-10388800	Enhancers	Right Ventricle	heart
26	chr11:10388000-10388800	Enhancers	Thymus	Thymus
27	chr11:10388000-10388800	Enhancers	Dnd41	blood
28	chr11:10388000-10388800	Enhancers	Hela-S3	cervix
29	chr11:10388000-10388800	Flanking Active TSS	HepG2	liver
30	chr11:10388000-10388800	Enhancers	NH-A	brain
31	chr11:10388000-10389000	Enhancers	H9 Cell Line	embryonic stem cell
32	chr11:10388000-10389000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:10388000-10389000	Enhancers	Brain Substantia Nigra	brain
34	chr11:10388000-10389000	Enhancers	Fetal Muscle Leg	muscle
35	chr11:10388000-10389000	Enhancers	Placenta	Placenta
36	chr11:10388000-10389000	Enhancers	Lung	lung
37	chr11:10388000-10389000	Enhancers	Psoas Muscle	Psoas
38	chr11:10388000-10389000	Enhancers	Right Atrium	heart
39	chr11:10388000-10389000	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr11:10388000-10389000	Enhancers	HSMM	muscle
41	chr11:10388000-10389000	Enhancers	Osteobl	bone
42	chr11:10388000-10390000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr11:10388200-10388800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr11:10388200-10388800	Enhancers	Brain Anterior Caudate	brain
45	chr11:10388200-10388800	Enhancers	Gastric	stomach
46	chr11:10388200-10389000	Enhancers	Spleen	Spleen
47	chr11:10388400-10388800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:10388400-10388800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr11:10388400-10388800	Enhancers	Aorta	Aorta
50	chr11:10388400-10388800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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