Variant report

Variant	rs6484216
Chromosome Location	chr11:10390094-10390095
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10327968..10329766-chr11:10387274..10390130,2	K562	blood:
2	chr11:10389794..10392279-chr11:10398849..10401977,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12282614	1.00[ASN][1000 genomes]
rs2923084	0.81[AFR][1000 genomes]
rs4243912	1.00[ASN][1000 genomes]
rs4277106	1.00[ASN][1000 genomes]
rs7122550	1.00[ASN][1000 genomes]
rs7123491	1.00[ASN][1000 genomes]
rs73403965	1.00[ASN][1000 genomes]
rs73403986	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10388400-10393800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr11:10388600-10396200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:10388800-10392800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr11:10388800-10394200	Weak transcription	Rectal Smooth Muscle	rectum
5	chr11:10388800-10394800	Weak transcription	Ovary	ovary
6	chr11:10388800-10401400	Weak transcription	Esophagus	oesophagus
7	chr11:10389000-10392600	Weak transcription	NHDF-Ad	bronchial
8	chr11:10389000-10392800	Weak transcription	NHLF	lung
9	chr11:10389000-10394800	Weak transcription	Lung	lung
10	chr11:10389000-10394800	Weak transcription	Psoas Muscle	Psoas
11	chr11:10389000-10394800	Weak transcription	Spleen	Spleen
12	chr11:10389000-10394800	Weak transcription	Osteobl	bone
13	chr11:10389000-10401400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr11:10389000-10401600	Weak transcription	Right Atrium	heart
15	chr11:10389400-10394800	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr11:10389600-10391800	Weak transcription	Adipose Nuclei	Adipose
17	chr11:10389800-10390600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:10389800-10391800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10389800-10394800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:10390000-10392600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10390000-10393400	Weak transcription	Liver	Liver
22	chr11:10390000-10394800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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