Variant report

Variant	rs4243912
Chromosome Location	chr11:10376991-10376992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT3	chr11:10376644-10377146	MCF10A-Er-Src	breast:	n/a	chr11:10376922-10376933 chr11:10376921-10376935 chr11:10376717-10376724
2	STAT3	chr11:10376682-10377184	MCF10A-Er-Src	breast:	n/a	chr11:10376922-10376933 chr11:10376921-10376935 chr11:10376717-10376724
3	STAT3	chr11:10376680-10377140	MCF10A-Er-Src	breast:	n/a	chr11:10376922-10376933 chr11:10376921-10376935 chr11:10376717-10376724
4	CEBPB	chr11:10376660-10377293	Hela-S3	cervix:	n/a	n/a
5	STAT3	chr11:10376783-10377101	MCF10A-Er-Src	breast:	n/a	chr11:10376922-10376933 chr11:10376921-10376935
6	FOS	chr11:10376709-10377146	MCF10A-Er-Src	breast:	n/a	n/a
7	USF2	chr11:10376908-10377171	Hela-S3	cervix:	n/a	n/a
8	FOS	chr11:10376813-10377124	MCF10A-Er-Src	breast:	n/a	n/a
9	MYC	chr11:10376685-10377284	MCF10A-Er-Src	breast:	n/a	n/a
10	FOS	chr11:10376732-10377183	MCF10A-Er-Src	breast:	n/a	n/a
11	FOS	chr11:10376685-10377234	MCF10A-Er-Src	breast:	n/a	n/a
12	MYC	chr11:10376756-10377252	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
AMPD3	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12282614	1.00[ASN][1000 genomes]
rs4277106	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6484216	1.00[ASN][1000 genomes]
rs7122550	1.00[ASN][1000 genomes]
rs7123491	1.00[ASN][1000 genomes]
rs73403965	1.00[ASN][1000 genomes]
rs73403986	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10369800-10378000	Enhancers	Placenta	Placenta
2	chr11:10373600-10388000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:10373800-10377400	Enhancers	Adipose Nuclei	Adipose
4	chr11:10374000-10377400	Weak transcription	NHDF-Ad	bronchial
5	chr11:10374200-10386400	Weak transcription	Small Intestine	intestine
6	chr11:10375600-10378200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:10375800-10377200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:10376000-10377200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr11:10376000-10377600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:10376000-10377600	Enhancers	Hela-S3	cervix
11	chr11:10376200-10377000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:10376200-10377200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:10376200-10377400	Enhancers	HSMMtube	muscle
14	chr11:10376200-10380000	Weak transcription	Lung	lung
15	chr11:10376200-10380000	Weak transcription	Ovary	ovary
16	chr11:10376400-10377400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr11:10376400-10377400	Enhancers	NHEK	skin
18	chr11:10376400-10388000	Weak transcription	Psoas Muscle	Psoas
19	chr11:10376600-10377200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr11:10376600-10377600	Enhancers	HMEC	breast
21	chr11:10376600-10377800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:10376600-10377800	Enhancers	NHLF	lung
23	chr11:10376600-10378000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:10376600-10378600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:10376600-10378800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
26	chr11:10376600-10378800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr11:10376800-10377000	Enhancers	Fetal Kidney	kidney

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