Variant report

Variant	rs4277106
Chromosome Location	chr11:10380223-10380224
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12282614	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4243912	0.90[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6484216	1.00[ASN][1000 genomes]
rs7122550	1.00[ASN][1000 genomes]
rs7123491	1.00[ASN][1000 genomes]
rs73403965	1.00[ASN][1000 genomes]
rs73403986	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10373600-10388000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:10374200-10386400	Weak transcription	Small Intestine	intestine
3	chr11:10376400-10388000	Weak transcription	Psoas Muscle	Psoas
4	chr11:10379600-10381200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:10379800-10381200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:10380000-10380600	Enhancers	Lung	lung
7	chr11:10380000-10381000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:10380000-10381000	Enhancers	Adipose Nuclei	Adipose
9	chr11:10380000-10381000	Enhancers	Ovary	ovary
10	chr11:10380000-10381000	Enhancers	HMEC	breast
11	chr11:10380200-10380400	Flanking Active TSS	NHEK	skin
12	chr11:10380200-10380600	Bivalent Enhancer	Esophagus	oesophagus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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