Variant report
| Variant | rs2924581 |
|---|---|
| Chromosome Location | chr4:99881529-99881530 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:99848578..99852948-chr4:99876464..99882582,7 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000151247 | Chromatin interaction |
| ENSG00000238449 | Chromatin interaction |
| ENSG00000263923 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10004975 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10023577 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10433890 | 0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11097640 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs11729285 | 0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12498533 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs12644580 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2100426 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs28494580 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34830689 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs35447189 | 0.82[EUR][1000 genomes] |
| rs4264834 | 0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs4699688 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4699693 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs6810489 | 0.82[EUR][1000 genomes] |
| rs6811070 | 0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6852715 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs7665587 | 0.82[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs7665590 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1009017 | chr4:99669441-100406394 | Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
