Variant report

Variant	rs6810489
Chromosome Location	chr4:99877445-99877446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99848578..99852948-chr4:99876464..99882582,7	K562	blood:

Variant related genes	Relation type
ENSG00000151247	Chromatin interaction
ENSG00000238449	Chromatin interaction
ENSG00000263923	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10004975	0.81[EUR][1000 genomes]
rs10023577	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs10032966	0.91[GIH][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap]
rs1037475	0.81[CEU][hapmap]
rs10433890	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs10516437	0.91[GIH][hapmap];0.81[LWK][hapmap];0.90[MEX][hapmap];0.82[TSI][hapmap]
rs11097640	0.85[EUR][1000 genomes]
rs11097643	0.81[CEU][hapmap]
rs11097645	0.80[CEU][hapmap]
rs11723037	0.96[CEU][hapmap];0.87[TSI][hapmap]
rs11725932	1.00[CEU][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11729285	0.82[EUR][1000 genomes]
rs11731878	0.81[CEU][hapmap]
rs12374261	0.81[CEU][hapmap]
rs12498533	0.96[CEU][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs12644580	0.96[CEU][hapmap];0.86[EUR][1000 genomes]
rs1453871	0.81[CEU][hapmap]
rs17028293	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17216446	0.81[CEU][hapmap]
rs1869459	0.81[CEU][hapmap]
rs2100426	0.86[EUR][1000 genomes]
rs28494580	0.85[EUR][1000 genomes]
rs28577966	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28613604	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2924581	0.82[EUR][1000 genomes]
rs34830689	0.81[EUR][1000 genomes]
rs35447189	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4264834	0.83[EUR][1000 genomes]
rs4699688	0.82[EUR][1000 genomes]
rs4699693	0.96[CEU][hapmap];0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs6811070	0.91[EUR][1000 genomes]
rs6830125	1.00[CEU][hapmap];0.92[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6841295	0.81[EUR][1000 genomes]
rs6846475	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6852715	0.96[CEU][hapmap];0.86[TSI][hapmap];0.84[EUR][1000 genomes]
rs7660937	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7661487	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7664964	0.96[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];0.88[MKK][hapmap];0.89[TSI][hapmap];0.92[YRI][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7674319	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7690818	0.81[CEU][hapmap]
rs7696573	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7696584	0.88[CEU][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7697071	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9332467	0.92[CEU][hapmap];0.91[GIH][hapmap];0.91[LWK][hapmap];0.90[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9996959	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6810489	ADH5	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

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