Variant report

Variant	rs1869459
Chromosome Location	chr4:99903268-99903269
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10014193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10016255	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10023577	0.85[CEU][hapmap]
rs10035037	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1037475	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10433890	0.85[CEU][hapmap]
rs11097643	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11097645	1.00[CEU][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11721765	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11723037	0.85[CEU][hapmap]
rs11725932	0.82[CEU][hapmap]
rs11730116	0.89[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11731878	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11940529	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11944824	0.99[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1230159	0.86[CHB][hapmap]
rs1230174	0.82[ASN][1000 genomes]
rs1230175	0.84[CHB][hapmap]
rs1230178	0.86[CHB][hapmap]
rs1230179	0.86[CHB][hapmap]
rs1230182	0.86[CHB][hapmap]
rs1230186	0.86[CHB][hapmap]
rs1230195	0.86[CHB][hapmap]
rs1230209	0.86[CHB][hapmap]
rs1234973	0.86[CHB][hapmap]
rs12374261	1.00[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12498533	0.84[CEU][hapmap]
rs12512420	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12644580	0.85[CEU][hapmap]
rs1453869	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1453871	1.00[CEU][hapmap];0.86[CHB][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1584838	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17028293	0.81[CEU][hapmap]
rs17216446	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2123782	0.85[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2167981	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2602910	0.86[CHB][hapmap]
rs28539514	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2866032	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35203362	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3974876	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4699693	0.85[CEU][hapmap]
rs62323229	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6810489	0.81[CEU][hapmap]
rs6817991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6822589	0.85[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6830125	0.85[CEU][hapmap]
rs6840282	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6840922	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6846221	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6848246	0.86[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6850128	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6850293	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6852715	0.85[CEU][hapmap]
rs6854386	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656935	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7674742	0.96[CEU][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7676259	0.86[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7690818	1.00[CEU][hapmap];0.86[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9685029	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9685062	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9992105	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99898400-99905600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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