Variant report

Variant	rs6846221
Chromosome Location	chr4:99883133-99883134
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99877054..99879604-chr4:99882920..99885468,2	K562	blood:

Variant related genes	Relation type
ENSG00000214886	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10004975	0.85[JPT][hapmap]
rs10014193	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10016255	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10023577	0.82[CEU][hapmap]
rs10035037	0.82[CEU][hapmap]
rs1037475	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10433890	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs11097643	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11097645	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11721765	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11723037	0.81[CEU][hapmap];0.87[JPT][hapmap]
rs11730116	0.86[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11731878	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11940529	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11944824	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1230188	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.95[ASN][1000 genomes]
rs1230190	1.00[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.94[ASN][1000 genomes]
rs12374261	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12498533	0.81[CEU][hapmap];0.86[JPT][hapmap]
rs12512420	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12644580	0.82[CEU][hapmap];0.87[JPT][hapmap]
rs1453869	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1453871	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1584838	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17216446	0.96[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1869459	0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2123782	0.82[CEU][hapmap]
rs2167981	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs28539514	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2866032	0.88[AMR][1000 genomes]
rs35203362	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3974876	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4699693	0.81[CEU][hapmap];0.94[JPT][hapmap]
rs62323229	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6811070	0.87[JPT][hapmap]
rs6817991	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6822589	0.82[CEU][hapmap]
rs6830125	0.81[CEU][hapmap]
rs6840922	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6848246	0.83[CEU][hapmap]
rs6852715	0.81[CEU][hapmap];0.87[JPT][hapmap]
rs6854386	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7674742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7676259	0.83[CEU][hapmap]
rs7690818	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9685062	0.90[AMR][1000 genomes]
rs9992105	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99882600-99883400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr4:99883000-99883600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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