Variant report

Variant	rs6822589
Chromosome Location	chr4:99901167-99901168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99849629..99852430-chr4:99898543..99901208,2	K562	blood:

Variant related genes	Relation type
ENSG00000263923	Chromatin interaction
ENSG00000151247	Chromatin interaction
ENSG00000238449	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10014193	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10016255	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10035037	1.00[CEU][hapmap];0.92[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1037475	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs11097643	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs11097645	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs11721765	0.82[ASN][1000 genomes]
rs11730116	0.85[CHB][hapmap];0.82[ASN][1000 genomes]
rs11731878	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs11940529	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11944824	0.85[EUR][1000 genomes]
rs1230174	0.82[ASN][1000 genomes]
rs1230175	0.80[YRI][hapmap]
rs1230209	0.86[YRI][hapmap]
rs1234973	0.85[CHB][hapmap]
rs12374261	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs1453869	0.82[EUR][1000 genomes]
rs1453871	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs1584838	0.82[EUR][1000 genomes]
rs17216446	0.85[CEU][hapmap]
rs1869459	0.85[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2123782	1.00[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2167981	0.82[ASN][1000 genomes]
rs28539514	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35203362	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3974876	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62323229	0.84[ASN][1000 genomes]
rs6817991	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6840282	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6840922	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6846221	0.82[CEU][hapmap]
rs6846475	0.85[CEU][hapmap]
rs6848246	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6850128	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6850293	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6854386	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7656935	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7674319	0.85[CEU][hapmap]
rs7674742	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs7676259	1.00[CEU][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7690818	0.85[CEU][hapmap];0.82[ASN][1000 genomes]
rs7696573	0.84[CEU][hapmap]
rs7696584	0.84[CEU][hapmap]
rs9332467	0.84[CEU][hapmap]
rs9685029	0.94[AFR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9685062	0.84[ASN][1000 genomes]
rs9992105	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009017	chr4:99669441-100406394	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99898400-99905600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:99898600-99901800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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