Variant report

Variant	rs2925729
Chromosome Location	chr5:41431521-41431522
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs10068649	0.80[EUR][1000 genomes]
rs10078334	0.84[CHB][hapmap]
rs1037690	0.84[CHB][hapmap]
rs10462017	0.82[CEU][hapmap]
rs10512774	0.82[CEU][hapmap]
rs10512775	0.82[CEU][hapmap]
rs10805659	0.84[CHB][hapmap]
rs11737958	0.82[CEU][hapmap]
rs11740787	0.82[CEU][hapmap]
rs11744499	0.82[CEU][hapmap]
rs11747859	0.82[CEU][hapmap]
rs1350299	0.84[CHB][hapmap]
rs1373639	0.82[CEU][hapmap]
rs1380996	0.84[CHB][hapmap]
rs1460953	0.82[CEU][hapmap]
rs1460955	0.86[CHB][hapmap]
rs161086	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs1645060	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs167628	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs16871219	0.82[CEU][hapmap]
rs16871220	0.82[CEU][hapmap]
rs16871222	0.82[CEU][hapmap]
rs16871258	0.82[CEU][hapmap]
rs16871269	0.82[CEU][hapmap]
rs1904178	0.82[CEU][hapmap]
rs2054445	0.82[CEU][hapmap]
rs2161542	0.82[CEU][hapmap]
rs223080	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap]
rs2329602	0.82[CEU][hapmap]
rs2329604	0.82[CEU][hapmap]
rs2329671	0.82[CEU][hapmap]
rs2860000	0.82[CEU][hapmap]
rs2925731	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs318836	0.86[CHB][hapmap]
rs318837	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs318838	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs318841	0.84[CHB][hapmap];0.91[JPT][hapmap]
rs318842	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs318843	0.86[CHB][hapmap];0.91[JPT][hapmap]
rs318844	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs318845	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs318846	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs318847	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs319013	0.84[CHB][hapmap]
rs319014	0.86[CHB][hapmap]
rs320623	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs4380706	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4380707	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs4383755	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4403222	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4557464	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4559042	0.80[EUR][1000 genomes]
rs4957153	0.82[CEU][hapmap]
rs6859578	1.00[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];0.80[EUR][1000 genomes]
rs730354	0.84[CHB][hapmap]
rs765176	0.82[CEU][hapmap]
rs765177	0.82[CEU][hapmap]
rs7700406	0.86[CHB][hapmap]
rs7701760	0.82[CEU][hapmap]
rs7703589	0.82[CEU][hapmap]
rs7704046	0.82[CEU][hapmap]
rs7722338	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7723649	0.82[CEU][hapmap]
rs7727658	0.82[CEU][hapmap]
rs7729454	0.82[CEU][hapmap]
rs7735604	0.82[CEU][hapmap]
rs921946	0.82[CHB][hapmap]
rs9292806	0.84[CHB][hapmap]
rs9654393	0.84[CHB][hapmap]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41418000-41433000	Weak transcription	Left Ventricle	heart
2	chr5:41419200-41433200	Weak transcription	Pancreas	Pancrea
3	chr5:41426400-41434800	Weak transcription	Aorta	Aorta
4	chr5:41428200-41432600	Weak transcription	Ovary	ovary
5	chr5:41428200-41433800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr5:41428200-41434000	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr5:41431000-41440000	Enhancers	Fetal Heart	heart
8	chr5:41431200-41431600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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