Variant report

Variant	rs4559042
Chromosome Location	chr5:41400609-41400610
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10044440	0.86[ASN][1000 genomes]
rs10053633	0.90[ASN][1000 genomes]
rs10055126	0.90[ASN][1000 genomes]
rs10068649	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071445	0.89[ASN][1000 genomes]
rs10078334	0.89[ASN][1000 genomes]
rs1037690	0.88[ASN][1000 genomes]
rs10805659	0.85[ASN][1000 genomes]
rs13166710	0.89[ASN][1000 genomes]
rs1350299	0.86[ASN][1000 genomes]
rs1380996	0.90[ASN][1000 genomes]
rs1460955	0.89[ASN][1000 genomes]
rs160966	0.89[ASN][1000 genomes]
rs161086	0.90[ASN][1000 genomes]
rs161087	0.94[ASN][1000 genomes]
rs1645060	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167627	0.89[ASN][1000 genomes]
rs167628	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223080	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2925729	0.80[EUR][1000 genomes]
rs2925731	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs318836	0.89[ASN][1000 genomes]
rs318837	0.94[ASN][1000 genomes]
rs318838	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs318839	0.94[ASN][1000 genomes]
rs318840	0.89[ASN][1000 genomes]
rs318841	0.91[ASN][1000 genomes]
rs318842	0.94[ASN][1000 genomes]
rs318843	0.93[ASN][1000 genomes]
rs318844	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs318845	0.93[ASN][1000 genomes]
rs318846	0.94[ASN][1000 genomes]
rs318847	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318849	0.94[ASN][1000 genomes]
rs319013	0.90[ASN][1000 genomes]
rs319014	0.89[ASN][1000 genomes]
rs319015	0.93[ASN][1000 genomes]
rs320622	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4051076	0.90[ASN][1000 genomes]
rs4380706	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380707	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs4383755	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403222	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4438921	0.90[ASN][1000 genomes]
rs4557464	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs545358	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859578	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730354	0.88[ASN][1000 genomes]
rs7700406	0.80[ASN][1000 genomes]
rs7713441	0.97[ASN][1000 genomes]
rs7718012	0.90[ASN][1000 genomes]
rs7722338	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921946	0.87[ASN][1000 genomes]
rs9292806	0.86[ASN][1000 genomes]
rs9654393	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41389800-41409000	Weak transcription	Ovary	ovary
2	chr5:41392400-41409400	Weak transcription	Right Ventricle	heart
3	chr5:41392600-41408400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:41393000-41401400	Weak transcription	Fetal Heart	heart
5	chr5:41397600-41406600	Weak transcription	Left Ventricle	heart
6	chr5:41398200-41400800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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