Variant report

Variant	rs545358
Chromosome Location	chr5:41382691-41382692
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10044440	0.86[ASN][1000 genomes]
rs10053633	0.90[ASN][1000 genomes]
rs10055126	0.90[ASN][1000 genomes]
rs10068649	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10071445	0.89[ASN][1000 genomes]
rs10078334	0.89[ASN][1000 genomes]
rs1037690	0.88[ASN][1000 genomes]
rs10805659	0.85[ASN][1000 genomes]
rs13166710	0.89[ASN][1000 genomes]
rs1350299	0.86[ASN][1000 genomes]
rs1380996	0.90[ASN][1000 genomes]
rs1460955	0.89[ASN][1000 genomes]
rs160966	0.89[ASN][1000 genomes]
rs161086	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs161087	0.94[ASN][1000 genomes]
rs1645060	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs167627	0.89[ASN][1000 genomes]
rs167628	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs223080	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2925731	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs318836	0.89[ASN][1000 genomes]
rs318837	0.94[ASN][1000 genomes]
rs318838	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs318839	0.94[ASN][1000 genomes]
rs318840	0.89[ASN][1000 genomes]
rs318841	0.91[ASN][1000 genomes]
rs318842	0.94[ASN][1000 genomes]
rs318843	0.93[ASN][1000 genomes]
rs318844	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs318845	0.93[ASN][1000 genomes]
rs318846	0.94[ASN][1000 genomes]
rs318847	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs318849	0.94[ASN][1000 genomes]
rs319013	0.90[ASN][1000 genomes]
rs319014	0.89[ASN][1000 genomes]
rs319015	0.93[ASN][1000 genomes]
rs320622	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4051076	0.90[ASN][1000 genomes]
rs4380706	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4380707	0.97[ASN][1000 genomes]
rs4383755	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4403222	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4438921	0.90[ASN][1000 genomes]
rs4557464	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4559042	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859578	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs730354	0.88[ASN][1000 genomes]
rs7700406	0.80[ASN][1000 genomes]
rs7713441	0.97[ASN][1000 genomes]
rs7718012	0.90[ASN][1000 genomes]
rs7722338	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs921946	0.87[ASN][1000 genomes]
rs9292806	0.86[ASN][1000 genomes]
rs9654393	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830269	chr5:41209113-41393536	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1851387	chr5:41336050-41423631	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1024631	chr5:41341979-41427953	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41372000-41389400	Weak transcription	Ovary	ovary
2	chr5:41375200-41390800	Weak transcription	Right Ventricle	heart
3	chr5:41381400-41383200	Weak transcription	Fetal Heart	heart
4	chr5:41381400-41383200	Strong transcription	Left Ventricle	heart
5	chr5:41381600-41385600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr5:41382600-41392400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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