Variant report

Variant	rs2925764
Chromosome Location	chr2:161013067-161013068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:160997062..160999873-chr2:161011563..161014295,2	MCF-7	breast:
2	chr2:161011380..161016239-chr2:161062030..161067547,8	MCF-7	breast:
3	chr2:161011705..161015715-chr2:161083220..161088389,8	MCF-7	breast:
4	chr2:161011213..161014505-chr2:161097199..161099716,3	MCF-7	breast:
5	chr2:161012600..161015178-chr2:161083788..161087804,4	MCF-7	breast:
6	chr2:161011918..161014903-chr2:161016994..161018899,2	K562	blood:
7	chr2:161011444..161016530-chr2:161074862..161081219,9	MCF-7	breast:
8	chr2:161011891..161014884-chr2:161060421..161064713,4	MCF-7	breast:
9	chr2:161012780..161016073-chr2:161064751..161067692,4	MCF-7	breast:
10	chr2:161012044..161015956-chr2:161077276..161081023,8	MCF-7	breast:
11	chr2:161011673..161014390-chr2:161015333..161017860,2	MCF-7	breast:

No data

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11890990	1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs2357863	1.00[MEX][hapmap]
rs2667034	1.00[MEX][hapmap]
rs2925765	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs2966388	0.87[ASW][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs3111394	1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs58430965	0.85[AFR][1000 genomes]
rs60947267	0.88[AFR][1000 genomes]
rs6724949	1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs73969108	0.91[AFR][1000 genomes]
rs73969110	0.88[AFR][1000 genomes]
rs7593257	0.91[AFR][1000 genomes]
rs7602804	1.00[YRI][hapmap]
rs7606596	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459929	chr2:160963603-161079435	Enhancers Active TSS Genic enhancers Flanking Active TSS Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv583497	chr2:160963603-161079435	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv875346	chr2:160965335-161044155	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1001502	chr2:160967864-161079450	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv528083	chr2:160998792-161015066	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:160959400-161032800	Weak transcription	Psoas Muscle	Psoas
2	chr2:160994400-161014800	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr2:160994400-161037400	Weak transcription	Pancreas	Pancrea
4	chr2:160994600-161038000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr2:160997200-161014600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr2:160997200-161021800	Weak transcription	Duodenum Mucosa	Duodenum
7	chr2:160999400-161022600	Weak transcription	Stomach Mucosa	stomach
8	chr2:161002600-161028400	Weak transcription	Lung	lung
9	chr2:161002800-161014600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:161003000-161021400	Weak transcription	Fetal Intestine Small	intestine
11	chr2:161005600-161013600	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr2:161005600-161022200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr2:161005600-161026000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr2:161005600-161037400	Weak transcription	Esophagus	oesophagus
15	chr2:161005800-161021800	Weak transcription	Fetal Intestine Large	intestine
16	chr2:161010400-161013800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr2:161010800-161013200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr2:161012400-161015000	Enhancers	HUVEC	blood vessel
19	chr2:161012600-161015200	Enhancers	HSMM	muscle
20	chr2:161012800-161013600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr2:161012800-161013600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:161012800-161013600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr2:161012800-161013600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:161012800-161013600	Enhancers	Left Ventricle	heart
25	chr2:161012800-161013800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
26	chr2:161012800-161013800	Enhancers	Hela-S3	cervix
27	chr2:161012800-161014000	Enhancers	NH-A	brain
28	chr2:161012800-161014200	Enhancers	Osteobl	bone
29	chr2:161012800-161014400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr2:161012800-161015000	Enhancers	A549	lung
31	chr2:161012800-161015200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr2:161012800-161015200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr2:161013000-161013600	Genic enhancers	HMEC	breast
34	chr2:161013000-161013600	Genic enhancers	NHEK	skin
35	chr2:161013000-161013600	Enhancers	NHLF	lung
36	chr2:161013000-161013800	Enhancers	NHDF-Ad	bronchial
37	chr2:161013000-161014200	Weak transcription	Placenta	Placenta
38	chr2:161013000-161015000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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