Variant report
| Variant | rs2931326 |
|---|---|
| Chromosome Location | chr8:62114861-62114862 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:6)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:6 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | RAD21 | chr8:62114745-62115019 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 2 | RAD21 | chr8:62114664-62115070 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 3 | CTCF | chr8:62114839-62114972 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 4 | CTCF | chr8:62114817-62115006 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 5 | CTCF | chr8:62114790-62115049 | H1-hESC | embryonic stem cell: | n/a | n/a |
| 6 | RAD21 | chr8:62114731-62115043 | H1-hESC | embryonic stem cell: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| NPM1P6 | TF binding region |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs2116466 | 0.83[ASN][1000 genomes] |
| rs2116468 | 0.83[ASN][1000 genomes] |
| rs2163609 | 0.83[ASN][1000 genomes] |
| rs2349937 | 0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2931324 | 0.81[EUR][1000 genomes] |
| rs2931325 | 0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2931327 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs4033372 | 0.81[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs56146367 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv948922 | chr8:61818964-62475097 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
| 2 | nsv465698 | chr8:62036793-62179465 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv611426 | chr8:62036793-62179465 | Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv890949 | chr8:62073346-62141341 | Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1024432 | chr8:62086247-62898782 | Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 6 | nsv981946 | chr8:62113798-62116324 | Inactive region | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
