Variant report

Variant	rs4033372
Chromosome Location	chr8:62097189-62097190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11778157	0.82[ASN][1000 genomes]
rs12541340	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12545360	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17764366	0.81[ASN][1000 genomes]
rs17831865	0.81[ASN][1000 genomes]
rs2003204	0.81[ASN][1000 genomes]
rs2017819	0.81[ASN][1000 genomes]
rs2116466	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2116468	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2163609	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2349937	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2931325	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2931326	0.92[CHB][hapmap];0.85[JPT][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2931327	0.92[CHB][hapmap];0.85[JPT][hapmap]
rs55901932	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56146367	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62524553	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67140761	0.81[ASN][1000 genomes]
rs7822608	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948922	chr8:61818964-62475097	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv465698	chr8:62036793-62179465	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611426	chr8:62036793-62179465	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1026243	chr8:62039073-62101123	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv890949	chr8:62073346-62141341	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4033372	CLVS1	cis	cerebellum	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62096400-62097400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr8:62096600-62097200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:62096600-62097400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr8:62096600-62097400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr8:62096600-62097600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr8:62096800-62097200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:62096800-62097200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr8:62096800-62097200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:62096800-62097200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr8:62096800-62097400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr8:62096800-62097400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:62096800-62097400	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr8:62096800-62097400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr8:62096800-62097600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr8:62097000-62097400	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr8:62097000-62097400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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