Variant report

Variant	rs2932047
Chromosome Location	chr3:111043298-111043299
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111042529..111044033-chr3:111050844..111053535,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10511294	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11920390	0.89[ASN][1000 genomes]
rs11920391	0.89[ASN][1000 genomes]
rs12106997	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1489030	1.00[ASN][1000 genomes]
rs1489031	1.00[ASN][1000 genomes]
rs1489032	0.97[ASN][1000 genomes]
rs1489033	0.89[ASN][1000 genomes]
rs1489034	0.89[ASN][1000 genomes]
rs1489035	0.89[ASN][1000 genomes]
rs2634552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634553	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2634554	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2675587	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28831219	0.86[ASN][1000 genomes]
rs28846108	0.86[ASN][1000 genomes]
rs2932071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932074	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2950971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2958079	0.97[ASN][1000 genomes]
rs2958080	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2971363	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2971364	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2971365	1.00[ASN][1000 genomes]
rs2971366	1.00[ASN][1000 genomes]
rs4145124	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6808323	0.86[ASN][1000 genomes]
rs7620684	0.86[ASN][1000 genomes]
rs7621095	0.86[ASN][1000 genomes]
rs7624812	0.89[ASN][1000 genomes]
rs7636637	0.89[ASN][1000 genomes]
rs9837511	0.83[ASN][1000 genomes]
rs9854335	0.89[ASN][1000 genomes]
rs9868323	0.89[ASN][1000 genomes]
rs9878888	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111033600-111044200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr3:111034800-111043600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:111035400-111044200	Weak transcription	HSMMtube	muscle
4	chr3:111041000-111043400	Weak transcription	HMEC	breast
5	chr3:111041000-111043400	Weak transcription	HSMM	muscle
6	chr3:111041000-111043600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr3:111041000-111045000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr3:111041600-111047200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr3:111042000-111043800	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr3:111042000-111044400	Enhancers	Primary B cells from peripheral blood	blood
11	chr3:111042200-111044000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr3:111042200-111044000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr3:111042600-111043600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
14	chr3:111042600-111043600	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr3:111042600-111044000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:111042600-111044400	Flanking Active TSS	Dnd41	blood
17	chr3:111042800-111043400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr3:111042800-111043800	Flanking Active TSS	Primary T cells from cord blood	blood
19	chr3:111042800-111043800	Active TSS	Primary T cells fromperipheralblood	blood
20	chr3:111042800-111043800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr3:111042800-111043800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
22	chr3:111042800-111043800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
23	chr3:111042800-111044000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr3:111042800-111044000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr3:111042800-111044200	Enhancers	Primary B cells from cord blood	blood
26	chr3:111043000-111043400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr3:111043000-111043400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr3:111043000-111043400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr3:111043000-111043400	Flanking Active TSS	Fetal Thymus	thymus
30	chr3:111043000-111043400	Active TSS	Thymus	Thymus
31	chr3:111043000-111043600	Enhancers	Primary hematopoietic stem cells	blood
32	chr3:111043000-111043600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
33	chr3:111043000-111043800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr3:111043200-111043400	Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr3:111043200-111043600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr3:111043200-111044200	Weak transcription	Adipose Nuclei	Adipose
37	chr3:111043200-111044400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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