Variant report

Variant	rs9878888
Chromosome Location	chr3:111060392-111060393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10511294	0.86[ASN][1000 genomes]
rs11920390	0.97[ASN][1000 genomes]
rs11920391	0.97[ASN][1000 genomes]
rs12106997	0.86[ASN][1000 genomes]
rs1489030	0.86[ASN][1000 genomes]
rs1489031	0.86[ASN][1000 genomes]
rs1489032	0.89[ASN][1000 genomes]
rs1489033	0.97[ASN][1000 genomes]
rs1489034	0.97[ASN][1000 genomes]
rs1489035	0.97[ASN][1000 genomes]
rs2634552	0.86[ASN][1000 genomes]
rs2634553	0.86[ASN][1000 genomes]
rs2634554	0.86[ASN][1000 genomes]
rs2675587	0.86[ASN][1000 genomes]
rs28831219	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28846108	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2932047	0.86[ASN][1000 genomes]
rs2932071	0.86[ASN][1000 genomes]
rs2932074	0.82[ASN][1000 genomes]
rs2950971	0.84[ASN][1000 genomes]
rs2958079	0.89[ASN][1000 genomes]
rs2958080	0.86[ASN][1000 genomes]
rs2971363	0.86[ASN][1000 genomes]
rs2971364	0.86[ASN][1000 genomes]
rs2971365	0.86[ASN][1000 genomes]
rs2971366	0.86[ASN][1000 genomes]
rs4145124	0.86[ASN][1000 genomes]
rs6808323	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7620684	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7621095	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7624812	0.97[ASN][1000 genomes]
rs7636637	0.97[ASN][1000 genomes]
rs9837511	0.91[ASN][1000 genomes]
rs9854335	0.97[ASN][1000 genomes]
rs9868323	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003106	chr3:110264476-111105943	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv460821	chr3:110637471-111501097	Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv591275	chr3:110637471-111501097	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv829675	chr3:110885605-111101858	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv877339	chr3:110889974-111070554	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111053200-111060800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:111058400-111060600	ZNF genes & repeats	Dnd41	blood
3	chr3:111060000-111060600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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