Variant report

Variant	rs2934408
Chromosome Location	chr12:74979328-74979329
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12298502	0.85[ASN][1000 genomes]
rs12315155	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1493813	1.00[JPT][hapmap]
rs1493831	0.92[ASN][1000 genomes]
rs1493833	0.92[ASN][1000 genomes]
rs1493834	0.92[ASN][1000 genomes]
rs17113566	0.84[ASN][1000 genomes]
rs17113587	0.84[ASN][1000 genomes]
rs1903420	0.92[ASN][1000 genomes]
rs2605349	1.00[JPT][hapmap]
rs2605371	0.92[ASN][1000 genomes]
rs2641455	1.00[JPT][hapmap]
rs2641456	1.00[JPT][hapmap]
rs2641483	0.92[ASN][1000 genomes]
rs2641487	0.92[ASN][1000 genomes]
rs2661710	1.00[JPT][hapmap]
rs73349693	0.92[ASN][1000 genomes]
rs7961467	1.00[EUR][1000 genomes]
rs7973277	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs903168	1.00[JPT][hapmap]
rs996431	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039468	chr12:74080586-75000246	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv899293	chr12:74835107-74995760	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv899295	chr12:74854750-74984992	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:74973400-74980000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr12:74975400-74980000	Weak transcription	Stomach Mucosa	stomach
3	chr12:74978800-74980200	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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