Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:74978813..74981241-chr12:74984479..74986913,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs12315155	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1493813	1.00[JPT][hapmap]
rs1493814	0.82[ASN][1000 genomes]
rs1493815	0.82[ASN][1000 genomes]
rs1493816	0.82[ASN][1000 genomes]
rs1493817	0.82[ASN][1000 genomes]
rs1493831	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1493833	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1493834	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17113566	0.92[ASN][1000 genomes]
rs17113587	0.92[ASN][1000 genomes]
rs1903420	1.00[ASN][1000 genomes]
rs2605349	1.00[JPT][hapmap]
rs2605371	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2641455	1.00[JPT][hapmap]
rs2641456	1.00[JPT][hapmap]
rs2641483	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2641505	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2641506	0.82[ASN][1000 genomes]
rs2661710	1.00[JPT][hapmap]
rs2934408	0.92[ASN][1000 genomes]
rs73349693	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7973277	1.00[CHB][hapmap];0.92[ASN][1000 genomes]
rs903168	1.00[JPT][hapmap]
rs996431	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039468	chr12:74080586-75000246	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv899293	chr12:74835107-74995760	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv899295	chr12:74854750-74984992	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:74979800-74980800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:74980000-74980600	Enhancers	Hela-S3	cervix
3	chr12:74980000-74980800	Enhancers	Brain Cingulate Gyrus	brain
4	chr12:74980000-74980800	Enhancers	Stomach Mucosa	stomach
5	chr12:74980000-74981000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr12:74980200-74980800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:74980200-74980800	Enhancers	Brain Anterior Caudate	brain
8	chr12:74980200-74980800	Enhancers	Brain Hippocampus Middle	brain
9	chr12:74980400-74980800	Enhancers	Brain Substantia Nigra	brain

Quick Search: