Variant report

Variant	rs2641506
Chromosome Location	chr12:74996473-74996474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10506691	1.00[EUR][1000 genomes]
rs11180130	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs11180131	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs12301887	0.81[YRI][hapmap];1.00[EUR][1000 genomes]
rs12304380	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12305557	1.00[EUR][1000 genomes]
rs12309066	1.00[EUR][1000 genomes]
rs12315155	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12315304	1.00[EUR][1000 genomes]
rs12319566	1.00[EUR][1000 genomes]
rs12322704	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1493813	1.00[JPT][hapmap]
rs1493814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1493815	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1493816	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1493817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1493831	0.82[ASN][1000 genomes]
rs1493833	0.82[ASN][1000 genomes]
rs1493834	0.82[ASN][1000 genomes]
rs17113816	1.00[EUR][1000 genomes]
rs17113895	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1903420	0.82[ASN][1000 genomes]
rs1982597	1.00[EUR][1000 genomes]
rs2605349	1.00[JPT][hapmap]
rs2605371	0.82[ASN][1000 genomes]
rs2641455	1.00[JPT][hapmap]
rs2641456	1.00[JPT][hapmap]
rs2641483	0.82[ASN][1000 genomes]
rs2641487	0.82[ASN][1000 genomes]
rs2641504	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2641505	1.00[ASN][1000 genomes]
rs2661710	1.00[JPT][hapmap]
rs59771966	1.00[EUR][1000 genomes]
rs59917367	1.00[EUR][1000 genomes]
rs60316938	1.00[EUR][1000 genomes]
rs7133693	1.00[EUR][1000 genomes]
rs73349693	0.82[ASN][1000 genomes]
rs73351333	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73355954	1.00[EUR][1000 genomes]
rs74105463	1.00[EUR][1000 genomes]
rs7955373	1.00[EUR][1000 genomes]
rs7961059	1.00[EUR][1000 genomes]
rs7973277	1.00[CHB][hapmap]
rs903168	1.00[JPT][hapmap]
rs980785	1.00[EUR][1000 genomes]
rs996431	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039468	chr12:74080586-75000246	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:74990000-74996800	Weak transcription	Stomach Mucosa	stomach
2	chr12:74994600-74996800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:74994800-74998000	Enhancers	Hela-S3	cervix
4	chr12:74996000-74997800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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