Variant report

Variant	rs1493816
Chromosome Location	chr12:74997170-74997171
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12315155	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1493813	1.00[JPT][hapmap]
rs1493814	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1493815	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1493817	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1493831	0.82[ASN][1000 genomes]
rs1493833	0.82[ASN][1000 genomes]
rs1493834	0.82[ASN][1000 genomes]
rs1903420	0.82[ASN][1000 genomes]
rs2605349	1.00[JPT][hapmap]
rs2605371	0.82[ASN][1000 genomes]
rs2641455	1.00[JPT][hapmap]
rs2641456	1.00[JPT][hapmap]
rs2641483	0.82[ASN][1000 genomes]
rs2641487	0.82[ASN][1000 genomes]
rs2641505	1.00[ASN][1000 genomes]
rs2641506	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2661710	1.00[JPT][hapmap]
rs73349693	0.82[ASN][1000 genomes]
rs7973277	1.00[CHB][hapmap]
rs903168	1.00[JPT][hapmap]
rs996431	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039468	chr12:74080586-75000246	Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:74994800-74998000	Enhancers	Hela-S3	cervix
2	chr12:74996000-74997800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:74996800-74998200	Enhancers	Stomach Mucosa	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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