Variant report
| Variant | rs12301887 |
|---|---|
| Chromosome Location | chr12:75046115-75046116 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:74930398..74932060-chr12:75044230..75046232,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000253719 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10506691 | 1.00[EUR][1000 genomes] |
| rs11180130 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11180131 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12304380 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12305557 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12309066 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12315304 | 0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12319566 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12322704 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1493814 | 1.00[EUR][1000 genomes] |
| rs1493815 | 1.00[EUR][1000 genomes] |
| rs1493817 | 1.00[EUR][1000 genomes] |
| rs17113816 | 1.00[EUR][1000 genomes] |
| rs17113895 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2641504 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2641506 | 1.00[EUR][1000 genomes] |
| rs59771966 | 1.00[EUR][1000 genomes] |
| rs59917367 | 1.00[EUR][1000 genomes] |
| rs60316938 | 1.00[EUR][1000 genomes] |
| rs73351333 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73355954 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74105463 | 1.00[EUR][1000 genomes] |
| rs7955373 | 1.00[EUR][1000 genomes] |
| rs7961059 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899297 | chr12:75045728-75169675 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv899298 | chr12:75045728-75173289 | Enhancers Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
