Variant report
| Variant | rs12309066 |
|---|---|
| Chromosome Location | chr12:74988242-74988243 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10506691 | 1.00[EUR][1000 genomes] |
| rs11180130 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11180131 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12301887 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12304380 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12305557 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12315304 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12319566 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12322704 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1493814 | 1.00[EUR][1000 genomes] |
| rs1493815 | 1.00[EUR][1000 genomes] |
| rs1493817 | 1.00[EUR][1000 genomes] |
| rs17113816 | 1.00[EUR][1000 genomes] |
| rs17113895 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1982597 | 1.00[EUR][1000 genomes] |
| rs2641504 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2641506 | 1.00[EUR][1000 genomes] |
| rs59771966 | 1.00[EUR][1000 genomes] |
| rs59917367 | 1.00[EUR][1000 genomes] |
| rs60316938 | 1.00[EUR][1000 genomes] |
| rs7133693 | 1.00[EUR][1000 genomes] |
| rs73351333 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73355954 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74105463 | 1.00[EUR][1000 genomes] |
| rs7955373 | 1.00[EUR][1000 genomes] |
| rs7961059 | 1.00[EUR][1000 genomes] |
| rs980785 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1039468 | chr12:74080586-75000246 | Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv899293 | chr12:74835107-74995760 | Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionmiRNA target site | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:74986000-74989200 | Weak transcription | Stomach Mucosa | stomach |
