The 2.0 version of rSNPBase

Variant report

Variant rs2937020
Chromosome Location chr5:179411660-179411661
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:179381600-179411800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr5:179392600-179414800 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr5:179396600-179461800 Weak transcription HSMM muscle
4 chr5:179400400-179412200 Strong transcription Primary monocytes fromperipheralblood blood
5 chr5:179404400-179421400 Weak transcription ES-I3 Cell Line embryonic stem cell
6 chr5:179404600-179439800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr5:179405200-179412200 Weak transcription Brain Cingulate Gyrus brain
8 chr5:179405200-179413600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
9 chr5:179405200-179421800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
10 chr5:179405200-179428200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr5:179405200-179429000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr5:179405200-179453400 Weak transcription Rectal Smooth Muscle rectum
13 chr5:179405800-179412400 Weak transcription HSMMtube muscle
14 chr5:179405800-179414400 Weak transcription H9 Cell Line embryonic stem cell
15 chr5:179406000-179412000 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr5:179406000-179418400 Weak transcription Fetal Lung lung
17 chr5:179406000-179428600 Weak transcription Skeletal Muscle Male skeletal muscle
18 chr5:179406600-179425400 Weak transcription Colon Smooth Muscle Colon
19 chr5:179406800-179421600 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr5:179407000-179428200 Weak transcription Gastric stomach
21 chr5:179407200-179415000 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr5:179407800-179412000 Weak transcription Primary B cells from cord blood blood
23 chr5:179407800-179413400 Weak transcription Brain Inferior Temporal Lobe brain
24 chr5:179407800-179414600 Weak transcription HUES48 Cell Line embryonic stem cell
25 chr5:179407800-179414600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
26 chr5:179407800-179414800 Weak transcription iPS-18 Cell Line embryonic stem cell
27 chr5:179407800-179417400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr5:179407800-179421000 Weak transcription HUES64 Cell Line embryonic stem cell
29 chr5:179408000-179413200 Weak transcription Brain Hippocampus Middle brain
30 chr5:179408000-179413200 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
31 chr5:179408000-179413200 Weak transcription Brain Substantia Nigra brain
32 chr5:179408000-179416200 Weak transcription HUES6 Cell Line embryonic stem cell
33 chr5:179408000-179418400 Weak transcription Adipose Nuclei Adipose
34 chr5:179408000-179418800 Weak transcription H1 Cell Line embryonic stem cell
35 chr5:179408000-179427800 Weak transcription Liver Liver
36 chr5:179408000-179428200 Weak transcription Left Ventricle heart
37 chr5:179408200-179411800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
38 chr5:179408200-179416000 Weak transcription Primary hematopoietic stem cells short term culture blood
39 chr5:179408200-179428000 Weak transcription Primary neutrophils fromperipheralblood blood
40 chr5:179408400-179413000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
41 chr5:179408400-179417200 Weak transcription Aorta Aorta
42 chr5:179408400-179417400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr5:179408400-179417400 Weak transcription Brain Germinal Matrix brain
44 chr5:179408400-179418000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
45 chr5:179408400-179418800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
46 chr5:179408400-179421400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
47 chr5:179408400-179421600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
48 chr5:179408600-179418600 Weak transcription Cortex derived primary cultured neurospheres brain
49 chr5:179408800-179421400 Weak transcription Fetal Brain Male brain
50 chr5:179409200-179416000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015