Variant report

Variant	rs294026
Chromosome Location	chr11:26529260-26529261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs167155	0.86[ASW][hapmap];0.91[LWK][hapmap];0.81[YRI][hapmap];0.87[AFR][1000 genomes]
rs186071	1.00[MEX][hapmap];0.83[AMR][1000 genomes]
rs2663159	0.83[AMR][1000 genomes]
rs293942	0.85[LWK][hapmap];0.82[MKK][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes]
rs293946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs293953	0.87[AFR][1000 genomes]
rs294007	0.83[YRI][hapmap];0.83[AMR][1000 genomes]
rs294008	0.83[AMR][1000 genomes]
rs294016	0.92[MKK][hapmap]
rs294023	0.83[AMR][1000 genomes]
rs294024	0.83[AMR][1000 genomes]
rs294025	1.00[MEX][hapmap];0.92[MKK][hapmap];0.83[AMR][1000 genomes]
rs35815334	0.83[AMR][1000 genomes]
rs364749	0.86[ASW][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[YRI][hapmap]
rs369392	0.83[AMR][1000 genomes]
rs369419	1.00[YRI][hapmap]
rs373534	1.00[YRI][hapmap]
rs378043	0.83[AMR][1000 genomes]
rs559186	0.83[AMR][1000 genomes]
rs7121768	0.84[MKK][hapmap]
rs976662	1.00[MEX][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr11:26526200-26529400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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