Variant report

Variant	rs7121768
Chromosome Location	chr11:26507189-26507190
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1022070	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs186071	0.85[AMR][1000 genomes]
rs2663159	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs294007	0.91[YRI][hapmap];0.98[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs294008	0.85[AMR][1000 genomes]
rs294016	0.88[ASW][hapmap];0.84[YRI][hapmap]
rs294023	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs294024	0.85[AMR][1000 genomes]
rs294025	0.88[ASW][hapmap];0.84[YRI][hapmap];0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs294026	0.84[MKK][hapmap]
rs35815334	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs369392	0.85[AMR][1000 genomes]
rs378043	0.94[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs559186	0.85[AMR][1000 genomes]
rs7118652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7936486	0.82[YRI][hapmap];0.88[AFR][1000 genomes]
rs7938745	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs976662	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051211	chr11:26473131-26604553	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv467778	chr11:26485520-26603926	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv553899	chr11:26485520-26603926	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv521916	chr11:26485520-26605331	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26506200-26512600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26506400-26564600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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