Variant report

Variant	rs2941893
Chromosome Location	chr5:90522439-90522440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:90513015..90523645-chr5:90674785..90682171,21	K562	blood:
2	chr5:90512455..90524285-chr5:90673793..90683360,52	MCF-7	breast:
3	chr5:90521924..90522580-chr5:90715150..90715713,2	MCF-7	breast:
4	chr5:90510244..90526030-chr5:90672528..90682389,53	MCF-7	breast:
5	chr5:90521677..90522591-chr5:90680450..90681318,6	MCF-7	breast:
6	chr5:90512732..90524610-chr5:90674652..90682171,24	K562	blood:
7	chr5:90521609..90522484-chr5:90714947..90715897,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARRDC3-4	chr5:90522292-90522888	ENSG00000251093

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1473047	0.81[AMR][1000 genomes]
rs2367292	0.80[AMR][1000 genomes]
rs2941894	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2941895	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2973472	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35554917	0.82[AMR][1000 genomes]
rs7731341	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90515600-90524200	Weak transcription	HMEC	breast
2	chr5:90515600-90524400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:90520800-90523400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:90521000-90523800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:90521200-90523600	Weak transcription	Hela-S3	cervix
6	chr5:90521200-90524400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:90521200-90530400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr5:90522400-90522600	Enhancers	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
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