Variant report

Variant	rs7731341
Chromosome Location	chr5:90524105-90524106
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10473943	0.83[EUR][1000 genomes]
rs11740321	0.83[EUR][1000 genomes]
rs13164949	0.81[CHB][hapmap]
rs1473047	0.83[EUR][1000 genomes]
rs16869606	0.83[EUR][1000 genomes]
rs2367292	0.83[CHB][hapmap];0.82[GIH][hapmap];0.86[TSI][hapmap]
rs28529720	0.83[EUR][1000 genomes]
rs2941893	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2941894	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.94[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2941895	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2973472	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35554917	0.83[EUR][1000 genomes]
rs4916707	0.93[ASW][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes]
rs4916708	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7705128	0.86[ASW][hapmap]
rs973332	0.83[CHB][hapmap];0.82[GIH][hapmap];0.89[TSI][hapmap]
rs997737	0.82[CHB][hapmap];0.82[GIH][hapmap];0.89[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90515600-90524200	Weak transcription	HMEC	breast
2	chr5:90515600-90524400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr5:90521200-90524400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr5:90521200-90530400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr5:90523400-90524200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:90523400-90526200	Weak transcription	Ovary	ovary
7	chr5:90523600-90524600	Enhancers	Hela-S3	cervix
8	chr5:90523600-90525000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr5:90523800-90524600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr5:90524000-90524600	Enhancers	Adipose Nuclei	Adipose
11	chr5:90524000-90524800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr5:90524000-90525200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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