Variant report

Variant	rs7705128
Chromosome Location	chr5:90519521-90519522
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2048454	0.81[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap];0.86[MEX][hapmap];0.81[ASN][1000 genomes]
rs4916706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916707	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4916853	0.85[CHB][hapmap]
rs4916857	0.85[CHB][hapmap]
rs6865066	0.85[CHB][hapmap]
rs6865269	0.85[CHB][hapmap]
rs7341005	0.91[CEU][hapmap];0.85[GIH][hapmap]
rs7704529	0.85[CHB][hapmap]
rs7712260	0.81[CEU][hapmap]
rs7731341	0.86[ASW][hapmap]
rs7732832	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024813	chr5:90321535-90870739	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv537806	chr5:90321535-90870739	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:90515200-90519800	Enhancers	Placenta	Placenta
2	chr5:90515600-90519600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr5:90515600-90524200	Weak transcription	HMEC	breast
4	chr5:90515600-90524400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:90515800-90519600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:90515800-90520600	Weak transcription	HSMMtube	muscle
7	chr5:90516000-90519600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:90516000-90519600	Weak transcription	HSMM	muscle
9	chr5:90516200-90519600	Weak transcription	Osteobl	bone
10	chr5:90516400-90520200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr5:90518000-90520400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr5:90518400-90520400	Weak transcription	A549	lung
13	chr5:90519200-90519800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr5:90519400-90520800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:90519400-90521000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr5:90519400-90521000	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:90519400-90521000	Enhancers	NHDF-Ad	bronchial
18	chr5:90519400-90521200	Enhancers	Hela-S3	cervix

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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