Variant report

Variant	rs2943671
Chromosome Location	chr1:85058141-85058142
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12119873	0.85[EUR][1000 genomes]
rs12123470	0.87[EUR][1000 genomes]
rs12125418	0.81[ASN][1000 genomes]
rs12127160	0.85[EUR][1000 genomes]
rs12137275	0.83[EUR][1000 genomes]
rs12145771	0.85[EUR][1000 genomes]
rs1417295	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1517601	0.84[EUR][1000 genomes]
rs1914477	0.85[EUR][1000 genomes]
rs2203455	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2303307	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2911588	0.81[AMR][1000 genomes]
rs2911591	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2911592	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2911594	0.82[EUR][1000 genomes]
rs2911595	0.98[ASN][1000 genomes]
rs2911597	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2911598	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2911599	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2911607	0.96[EUR][1000 genomes]
rs2911609	0.94[EUR][1000 genomes]
rs2945143	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2945145	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2945147	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2945149	0.91[ASN][1000 genomes]
rs2945153	0.85[EUR][1000 genomes]
rs2994435	0.85[EUR][1000 genomes]
rs2994934	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2994935	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2994937	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2994938	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2994943	0.82[ASN][1000 genomes]
rs2994944	0.91[ASN][1000 genomes]
rs2994947	0.98[ASN][1000 genomes]
rs2994948	0.83[EUR][1000 genomes]
rs41299545	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4356070	0.82[EUR][1000 genomes]
rs7517756	0.83[EUR][1000 genomes]
rs880412	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85051000-85069800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:85052000-85064600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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