Variant report

Variant	rs4356070
Chromosome Location	chr1:85042000-85042001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85040466..85042316-chr1:85099444..85102197,2	MCF-7	breast:
2	chr1:84943703..84948095-chr1:85037647..85043843,8	K562	blood:

Variant related genes	Relation type
ENSG00000180869	Chromatin interaction
ENSG00000117133	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10493752	0.81[ASN][1000 genomes]
rs11164004	0.81[ASN][1000 genomes]
rs11164005	0.81[ASN][1000 genomes]
rs12119873	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12123470	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12127160	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12131448	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12137275	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12140532	0.81[ASN][1000 genomes]
rs12141472	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12145771	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1517601	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1517602	0.81[ASN][1000 genomes]
rs15911	0.81[ASN][1000 genomes]
rs17374628	0.81[ASN][1000 genomes]
rs17374941	0.81[ASN][1000 genomes]
rs1914477	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2203455	0.85[EUR][1000 genomes]
rs2303307	0.82[EUR][1000 genomes]
rs2911591	0.82[EUR][1000 genomes]
rs2911592	0.86[EUR][1000 genomes]
rs2911594	0.98[EUR][1000 genomes]
rs2943671	0.82[EUR][1000 genomes]
rs2994948	0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs41299545	0.82[EUR][1000 genomes]
rs4907080	0.81[ASN][1000 genomes]
rs7517756	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000325	chr1:85032605-85100748	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85040000-85049400	Weak transcription	Spleen	Spleen
2	chr1:85040600-85043200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:85040600-85048400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:85040800-85042600	Weak transcription	HMEC	breast
5	chr1:85040800-85046600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr1:85040800-85048200	Weak transcription	Primary B cells from cord blood	blood
7	chr1:85040800-85048600	Weak transcription	Gastric	stomach
8	chr1:85040800-85049200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:85041000-85042400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:85041000-85042400	Weak transcription	NHEK	skin
11	chr1:85041000-85042600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:85041000-85042600	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr1:85041000-85043400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:85041000-85044400	Weak transcription	Brain Substantia Nigra	brain
15	chr1:85041000-85048600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:85041000-85048800	Weak transcription	Brain Cingulate Gyrus	brain
17	chr1:85041000-85051600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:85041200-85046400	Weak transcription	K562	blood
19	chr1:85041200-85047400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:85041200-85049400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr1:85041400-85042600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr1:85041400-85042600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:85041400-85049200	Weak transcription	HUES48 Cell Line	embryonic stem cell

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