Variant report

Variant	rs2950910
Chromosome Location	chr8:35144450-35144451
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1406379	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1406380	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1528706	0.81[EUR][1000 genomes]
rs1528723	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1528725	0.86[EUR][1000 genomes]
rs1950044	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2056767	0.85[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2204720	0.86[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs2950894	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2950922	0.86[EUR][1000 genomes]
rs2950931	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3108620	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3108624	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs4585746	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4641063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62505482	0.85[EUR][1000 genomes]
rs6995169	0.84[CEU][hapmap]
rs72633560	0.86[EUR][1000 genomes]
rs7820017	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35124400-35145200	Weak transcription	Fetal Brain Female	brain
2	chr8:35124600-35151200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:35135800-35148800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:35139800-35151200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:35143800-35144600	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr8:35143800-35144800	Strong transcription	H1 Cell Line	embryonic stem cell
7	chr8:35143800-35144800	Strong transcription	HUES64 Cell Line	embryonic stem cell
8	chr8:35144000-35144600	Strong transcription	H9 Cell Line	embryonic stem cell
9	chr8:35144000-35144600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:35144000-35144600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:35144000-35144800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr8:35144000-35145800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
13	chr8:35144400-35146200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:35144400-35151000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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