Variant report

Variant	rs1528706
Chromosome Location	chr8:35099765-35099766
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1406379	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1406380	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1528723	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1950044	0.81[EUR][1000 genomes]
rs2204720	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2950910	0.81[EUR][1000 genomes]
rs2950931	0.81[EUR][1000 genomes]
rs3108624	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4527865	0.82[EUR][1000 genomes]
rs4641063	0.81[EUR][1000 genomes]
rs55954471	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56109802	0.82[EUR][1000 genomes]
rs56328805	0.82[EUR][1000 genomes]
rs56843404	0.81[EUR][1000 genomes]
rs62503909	0.82[EUR][1000 genomes]
rs62503910	0.93[EUR][1000 genomes]
rs62503912	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6995169	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs7820017	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35095400-35099800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:35095400-35100200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:35095600-35104000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:35096000-35100400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr8:35096000-35101200	Enhancers	Fetal Brain Male	brain
6	chr8:35096000-35135400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:35096400-35117400	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr8:35097000-35100400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:35097200-35100600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr8:35097200-35108400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr8:35097600-35124000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr8:35098200-35099800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr8:35098800-35117600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr8:35099000-35100800	Enhancers	Fetal Brain Female	brain
15	chr8:35099000-35102200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr8:35099200-35100200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:35099200-35102600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:35099600-35101200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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