Variant report

Variant	rs56843404
Chromosome Location	chr8:35072239-35072240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1376522	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1528706	0.81[EUR][1000 genomes]
rs16883653	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16883662	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16883666	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16883679	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4527865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55954471	0.82[EUR][1000 genomes]
rs56109802	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56328805	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56372812	0.92[EUR][1000 genomes]
rs56976659	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62503871	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62503874	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62503909	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs62503912	0.82[EUR][1000 genomes]
rs6995169	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7825763	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7834429	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831284	chr8:35018419-35193084	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv429910	chr8:35021411-35257445	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35072000-35072800	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:35072200-35072800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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