Variant report

Variant	rs2952894
Chromosome Location	chr4:130738623-130738624
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs2391514	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2391534	0.80[CEU][hapmap];0.83[TSI][hapmap]
rs2391540	0.80[EUR][1000 genomes]
rs2391552	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2391553	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2952859	0.84[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap]
rs2952860	0.89[JPT][hapmap]
rs2952861	0.83[TSI][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2952895	0.83[EUR][1000 genomes]
rs2952898	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2955477	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2968923	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2968973	0.83[EUR][1000 genomes]
rs2968999	0.84[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap]
rs2969000	0.89[JPT][hapmap]
rs2969009	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428770	chr4:130692631-130863832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1023482	chr4:130737503-130783577	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv523994	chr4:130738623-130774012	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130737400-130739200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:130738600-130743400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links