Variant report

Variant	rs2969009
Chromosome Location	chr4:130744536-130744537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs2391514	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391534	0.80[CHD][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap]
rs2391535	0.83[JPT][hapmap]
rs2391552	0.82[EUR][1000 genomes]
rs2391553	0.82[EUR][1000 genomes]
rs2952861	0.85[GIH][hapmap];0.85[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.82[EUR][1000 genomes]
rs2952894	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2952895	0.82[EUR][1000 genomes]
rs2952898	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2955477	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968923	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2968973	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428770	chr4:130692631-130863832	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1023482	chr4:130737503-130783577	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv523994	chr4:130738623-130774012	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv1029003	chr4:130740015-130767559	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130742200-130744600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr4:130742800-130745200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr4:130743000-130745000	Enhancers	Hela-S3	cervix
4	chr4:130743000-130745000	Enhancers	HUVEC	blood vessel
5	chr4:130743600-130745200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:130743800-130745000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr4:130744000-130744800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr4:130744000-130745000	Enhancers	Adipose Nuclei	Adipose
9	chr4:130744200-130745200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr4:130744400-130744800	Enhancers	NH-A	brain
11	chr4:130744400-130745000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:130744400-130745200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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