Variant report

Variant	rs2954011
Chromosome Location	chr8:126424379-126424380
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:126421735..126426539-chr8:126441238..126444282,6	MCF-7	breast:
2	chr8:126423701..126426127-chr8:126431963..126433656,2	K562	blood:
3	chr8:126422645..126424446-chr8:126427543..126429328,2	K562	blood:
4	chr8:126423136..126426009-chr8:126441084..126444048,6	MCF-7	breast:
5	chr8:126416710..126419523-chr8:126422808..126425210,2	K562	blood:
6	chr8:126423668..126425842-chr8:126436681..126438719,2	MCF-7	breast:
7	chr8:126420234..126422161-chr8:126424104..126426452,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000173334	Chromatin interaction

rs_ID	r²[population]
rs2954010	0.82[EUR][1000 genomes]
rs2980857	0.86[CEU][hapmap];0.88[EUR][1000 genomes]
rs2980872	0.86[CHB][hapmap]
rs3201475	1.00[YRI][hapmap]
rs4870940	0.86[ASN][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs2954011	TRIB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:126404400-126424400	Weak transcription	Spleen	Spleen
2	chr8:126417800-126426200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:126417800-126430200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr8:126418000-126424800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:126421600-126424800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:126421800-126425200	Enhancers	Pancreas	Pancrea
7	chr8:126421800-126433600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:126422000-126425800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:126422400-126425200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:126422400-126425200	Enhancers	HMEC	breast
11	chr8:126422400-126425400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:126422400-126426600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:126422600-126425200	Enhancers	Liver	Liver
14	chr8:126422800-126424400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:126422800-126425400	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr8:126423000-126425200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:126423000-126425200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr8:126423000-126426000	Weak transcription	K562	blood
19	chr8:126423000-126426200	Enhancers	Lung	lung
20	chr8:126423000-126428200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr8:126423200-126424400	Weak transcription	Adipose Nuclei	Adipose
22	chr8:126423200-126424400	Weak transcription	Brain Hippocampus Middle	brain
23	chr8:126423200-126424800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr8:126423200-126425200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr8:126423200-126425400	Enhancers	Osteobl	bone
26	chr8:126423200-126428800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr8:126423400-126424400	Weak transcription	Small Intestine	intestine
28	chr8:126423400-126424400	Enhancers	A549	lung
29	chr8:126423400-126424400	Weak transcription	NHDF-Ad	bronchial
30	chr8:126423400-126424600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:126423400-126424600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr8:126423400-126424600	Weak transcription	Placenta	Placenta
33	chr8:126423400-126424600	Weak transcription	NHEK	skin
34	chr8:126423400-126425000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr8:126423400-126425200	Enhancers	Colonic Mucosa	Colon
36	chr8:126423400-126429000	Weak transcription	NH-A	brain
37	chr8:126423400-126441200	Weak transcription	Right Atrium	heart
38	chr8:126423600-126424600	Weak transcription	Fetal Intestine Small	intestine
39	chr8:126423600-126424800	Weak transcription	Left Ventricle	heart
40	chr8:126423600-126425800	Weak transcription	Fetal Muscle Trunk	muscle
41	chr8:126424000-126424800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr8:126424000-126425000	Enhancers	NHLF	lung
43	chr8:126424000-126425200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr8:126424000-126425200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr8:126424000-126425200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr8:126424000-126425200	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr8:126424200-126424600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr8:126424200-126424800	Enhancers	Sigmoid Colon	Sigmoid Colon
49	chr8:126424200-126425000	Enhancers	Duodenum Mucosa	Duodenum
50	chr8:126424200-126425000	Enhancers	Rectal Mucosa Donor 29	rectum

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