Variant report

Variant	rs2954365
Chromosome Location	chr5:113457489-113457490
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10038171	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078819	1.00[ASN][1000 genomes]
rs10078889	1.00[ASN][1000 genomes]
rs10478151	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2416355	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2632139	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4645324	1.00[ASN][1000 genomes]
rs7703847	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7703859	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7726250	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882726	chr5:113404933-113555626	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1020064	chr5:113418512-113492951	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:113453200-113465200	Weak transcription	Pancreas	Pancrea
2	chr5:113454800-113457800	Weak transcription	Left Ventricle	heart
3	chr5:113455600-113462800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:113456000-113468600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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